**Parts of Book**

- N. R. Gupta and Ali Borhan, 2003,
*Capsule motion and deformation in tube and channel flow*, CRC Press LLC, pp. 263-326

**Journal Articles**

- M. Bell, K. A. Fitchorn and A. Borhan, 2016, "Effect of Gravity on the Configuration of Droplets on Two-Dimensional Physically Patterned Surfaces", Langmuir,
**32**, (16)

- S. P. Motevalian, A. Borhan, H. Zhou and A. L. Zydney, 2016, "Twisted Hollow Fiber Membranes for Enhanced Mass Transfer", J. Membrane Sci.,
**514**

- M. Bell, A. Shahraz, K. A. Fitchorn and A. Borhan, 2015, "Effects of hierarchical surface roughness on droplet contact angle", Langmuir,
**31**, (24), pp. 6752-6762

- S. Yazdi, A. Ardekani and A. Borhan, 2015, "Swimming dynamics near a wall in a weakly elastic fluid", J. Nonlinear Sci.,
**25**, (5), pp. 1153-1167

- A Shahraz, Ali Borhan and Kristen A Fichthorn, 2014, "Kinetics of droplet wetting mode transitions on grooved surfaces: forward flux sampling.", Langmuir : the ACS journal of surfaces and colloids,
**30**, (51), pp. 15442-50

- S Yazdi, A M Ardekani and Ali Borhan, 2014, "Locomotion of microorganisms near a no-slip boundary in a viscoelastic fluid.", Physical review. E, Statistical, nonlinear, and soft matter physics,
**90**, (4), pp. 043002

- A Nourhani, Paul E Lammert, Ali Borhan and Vincent H Crespi, 2014, "Kinematic matrix theory and universalities in self-propellers and active swimmers.", Physical review. E, Statistical, nonlinear, and soft matter physics,
**89**, (6), pp. 062304

- E. Almatroushi and Ali Borhan, 2014, "Coalescence of viscous drops translating through a capillary tube", Heat & Mass Trans.,
**50**, pp. 341-350

- A Nourhani, Y M Byun, Paul E Lammert, Ali Borhan and Vincent H Crespi, 2013, "Nanomotor mechanisms and motive force distributions from nanorotor trajectories.", Physical review. E, Statistical, nonlinear, and soft matter physics,
**88**, (6), pp. 062317

- A Shahraz, Ali Borhan and Kristen A Fichthorn, 2013, "Wetting on physically patterned solid surfaces: the relevance of molecular dynamics simulations to macroscopic systems.", Langmuir : the ACS journal of surfaces and colloids,
**29**, (37), pp. 11632-9

- P Fattahi, Ali Borhan and Mohammad Abidian, 2013, "Microencapsulation of chemotherapeutics into monodisperse and tunable biodegradable polymers via electrified liquid jets: control of size, shape, and drug release.", Advanced materials (Deerfield Beach, Fla.),
**25**, (33), pp. 4555-60

- A Nourhani, Paul E Lammert, Ali Borhan and Vincent H Crespi, 2013, "Chiral diffusion of rotary nanomotors.", Physical review. E, Statistical, nonlinear, and soft matter physics,
**87**, (5), pp. 050301

- O, Fattahi, Ali Borhan and M. R. Abidian, 2013, "Characterization of the size, shape, and drug encapsulation efficiency of PLGA microcapsules produced via electrojetting for drug delivery to brain tumors", pp. 953-956

- H Jamshidian, Ali Borhan, S Kooraki and Ali Borhan, 2012, "Evaluation of the efficacy of once-daily use of tadalafil vs. on-demand use. Is there a cumulative effect?", JPMA. The Journal of the Pakistan Medical Association,
**62**, (11), pp. 1195-8

- A Shahraz, Ali Borhan and Kristen A Fichthorn, 2012, "A theory for the morphological dependence of wetting on a physically patterned solid surface.", Langmuir : the ACS journal of surfaces and colloids,
**28**, (40), pp. 14227-37

- N F Baril, R He, T D Day, J R Sparks, B Keshavarzi, M Krishnamurthi, Ali Borhan, Venkatraman Gopalan, A C Peacock, N Healy, P J Sazio and John V Badding, 2012, "Confined high-pressure chemical deposition of hydrogenated amorphous silicon.", Journal of the American Chemical Society,
**134**, (1), pp. 19-22

- H. F. Wu*, H. Haj-Hariri and Ali Borhan, 2012, "Stability of the shape of a translating viscoelastic drop at low Reynolds number", Phys. Fluids,
**24**, pp. 15

- N. F. Baril, R. He, T. D. Day, J. R. Sparks, B. Keshavarzi, M. Krishnamurthy, Ali Borhan, V. Gopalan, P. J. A. Sazio and J. V. Badding, 2012, "High pressure deposition of amorphous hydrogenated silicon in confined geometries", J. Am. Chem. Soc.,
**134**, pp. 19-22

- E. Almatroushi, S. Werber and Ali Borhan, 2011, "Breakup of surfactant-laden drops in pressure-driven flow through square channels", Int. J. Trans. Phen.,
**12**, (3/4), pp. 211-216

- A. D. Fick, H. Haj-Hariri and Ali Borhan, 2011, "Numerical simulation of buoyancy-driven motion of drops in a tube using a hybrid VOF-level set method", Int. J. Trans. Phen.,
**12**, (3/4), pp. 177-187

- B. Keshavarzi, J. S. Ultman and Ali Borhan, 2011, "Numerical simulation of ozone uptake in the respiratory tract during steady inspiratory flow", Int. J. Trans. Phen.,
**12**, (1/2), pp. 13-24

- N F Baril, B Keshavarzi, J R Sparks, M Krishnamurthi, I Temnykh, P J Sazio, A C Peacock, Ali Borhan, Venkatraman Gopalan and John V Badding, 2010, "High-pressure chemical deposition for void-free filling of extreme aspect ratio templates.", Advanced materials (Deerfield Beach, Fla.),
**22**, (41), pp. 4605-11

- H Wu, Ali Borhan and Kristen A Fichthorn, 2010, "Interaction of fluids with physically patterned solid surfaces.", The Journal of chemical physics,
**133**, (5), pp. 054704

- H. Wu, Ali Borhan and K. A. Fichthorn, 2010, "Coarse-grained interaction of a fluid with a physically-patterned solid surface: Application to nanodroplet wetting", J. Low Temp. Phys.,
**157**, (3), pp. 277-295

- N. F. Baril, B. Keshavarzi, J. Sparks, M. Krishnamurthy, I. Temnykh, P. J. A. Sazio, A. C. Peacock, Ali Borhan, V. Gopalan and J. V. Badding, 2010, "High pressure Chemical Deposition for Void-Free Filling of Extreme Aspect Ratio Templates", Adv. Materials,
**22**, (41), pp. 4605-4611

- A Padaki, J S Ultman and Ali Borhan, 2009, "Ozone Uptake During Inspiratory Flow in a Model of the Larynx, Trachea and Primary Bronchial Bifurcation.", Chemical engineering science,
**64**, (22), pp. 4640-4648

- E Al-Matroushi and Ali Borhan, 2009, "Coalescence of drops and bubbles rising through a non-Newtonian fluid in a tube.", Annals of the New York Academy of Sciences,
**1161**, pp. 225-33

- R. You, H. Haj-Hariri and Ali Borhan, 2009, "Confined drop motion in viscoelastic two-phase systems", Phys. Fluids,
**21**

- R. You, H. Haj-Hariri and Ali Borhan, 2009, "Stability analysis of cusped bubbles in viscoelastic flows", J. Fluid Mech.,
**621**, pp. 131-154

- S Madasu, J S Ultman and Ali Borhan, 2008, "Comparison of axisymmetric and three-dimensional models for gas uptake in a single bifurcation during steady expiration.", Journal of biomechanical engineering,
**130**, (1), pp. 011013

- R. You, Ali Borhan and H. Haj-Hariri, 2008, "A finite volume formulation for simulating drop motion in a viscoelastic two-phase system", J. Non-Newtonian Fluid Mech.,
**153**, (2/3), pp. 109-129

- N R Gupta, H Haj-Hariri and Ali Borhan, 2007, "Thermocapillary convection in double-layer fluid structures within a two-dimensional open cavity.", Journal of colloid and interface science,
**315**, (1), pp. 237-47

- S Madasu, Ali Borhan and J Ultman, 2007, "Gas uptake in a three-generation model geometry with a flat inlet velocity during steady inspiration: comparison of axisymmetric and three-dimensional models.", Inhalation toxicology,
**19**, (6-7), pp. 495-503

- S Madasu, Ali Borhan and J Ultman, 2007, "Gas uptake in a three-generation model geometry during steady expiration: comparison of axisymmetric and three-dimensional models.", Inhalation toxicology,
**19**, (3), pp. 199-210; discussion 211-2

- A B Taylor, Ali Borhan and J S Ultman, 2007, "Three-dimensional simulations of reactive gas uptake in single airway bifurcations.", Annals of biomedical engineering,
**35**, (2), pp. 235-49

- K Y Chan and Ali Borhan, 2006, "Spontaneous spreading of surfactant-bearing drops in the sorption-controlled limit.", Journal of colloid and interface science,
**302**, (1), pp. 374-7

- E Almatroushi and Ali Borhan, 2006, "Coalescence of bubbles translating through a tube.", Annals of the New York Academy of Sciences,
**1077**, pp. 508-26

- N R Gupta, H Haj-Hariri and Ali Borhan, 2006, "Double-layer thermocapillary convection in a differentially heated cavity.", Annals of the New York Academy of Sciences,
**1077**, pp. 395-414

- A D Fick and Ali Borhan, 2006, "Numerical simulation of the spontaneous penetration of liquids into cylindrical capillaries.", Annals of the New York Academy of Sciences,
**1077**, pp. 426-42

- S Madasu, Ali Borhan and J S Ultman, 2006, "An axisymmetric single-path model for gas transport in the conducting airways.", Journal of biomechanical engineering,
**128**, (1), pp. 69-75

- N R Gupta, H Haj-Hariri and Ali Borhan, 2006, "Thermocapillary flow in double-layer fluid structures: an effective single-layer model.", Journal of colloid and interface science,
**293**, (1), pp. 158-71

- A. Nadim and Ali Borhan, 2006, "Confined motion of a long bubble through a power-law fluid", Applied Mathematics Research eXpress,
**2006**, pp. 1-11

- E. Almatroushi and Ali Borhan, 2006, "Interaction and coalescence of drops and bubbles rising through a tube", Ind. Eng. Chem. Res.,
**45**, (1), pp. 398-406

- K Y Chan and Ali Borhan, 2005, "Surfactant-assisted spreading of a liquid drop on a smooth solid surface.", Journal of colloid and interface science,
**287**, (1), pp. 233-48

- E Almatroushi and Ali Borhan, 2004, "Surfactant effect on the buoyancy-driven motion of bubbles and drops in a tube.", Annals of the New York Academy of Sciences,
**1027**, pp. 330-41

- Ali Borhan, J E Reeder, M J O'Connell, K O Wright, L L Wheeless, P A di Sant'Agnese, M L McNally and E M Messing, 2003, "Grade progression and regression in recurrent urothelial cancer.", The Journal of urology,
**169**, (6), pp. 2106-9

- Ronald Johnson and Ali Borhan, 2003, "Pressure-driven motion of surfactant-laden drops through cylindrical capillaries: effect of surfactant solubility.", Journal of colloid and interface science,
**261**, (2), pp. 529-41

- N R Gupta, A Nadim, H Haj-Hariri and Ali Borhan, 2002, "A numerical study of the effect of insoluble surfactants on the stability of a viscous drop translating in a Hele-Shaw cell.", Journal of colloid and interface science,
**252**, (1), pp. 236-48

- N R Gupta, A Nadim, H Haj-Hariri and Ali Borhan, 2000, "Stability of the Shape of a Viscous Drop under Buoyancy-Driven Translation in a Hele-Shaw Cell.", Journal of colloid and interface science,
**222**, (1), pp. 107-116

- R. A. Johnson and Ali Borhan, 2000, "The effect of surfactants on the stability of the shape of translating drops at low Reynolds number", Phys. Fluids,
**12**, (4), pp. 773-784

- N. R. Gupta, A. Nadim, H. Haj-Hariri and Ali Borhan, 2000, "The stability of the shape of viscous drops translating through a Hele-Shaw cell", J. Colloid Interface Sci.,
**222**, pp. 107-116

- Ronald Johnson and Ali Borhan, 1999, "Effect of Insoluble Surfactants on the Pressure-Driven Motion of a Drop in a Tube in the Limit of High Surface Coverage.", Journal of colloid and interface science,
**218**, (1), pp. 184-200

- N R Gupta, A Nadim, H Haj-Hariri and Ali Borhan, 1999, "On the Linear Stability of a Circular Drop Translating in a Hele-Shaw Cell.", Journal of colloid and interface science,
**218**, (1), pp. 338-340

- Ali Borhan, B A Kogan and J Mandell, 1999, "Upper ureteral reconstructive surgery.", The Urologic clinics of North America,
**26**, (1), pp. 175-81, x

- Ali Borhan and J. Pallinti, 1999, "Breakup of drops and bubbles translating through cylindrical capillaries", Phys. Fluids,
**11**, (10), pp. 2846-2855

- Ali Borhan and J. Pallinti, 1998, "Pressure-driven motion of drops and bubbles through cylindrical capillaries: effect of buoyancy", Ind. Eng. Chem. Res.,
**37**, (9), pp. 3748-3759

- Q. Shi, H. Haj-Hariri and Ali Borhan, 1997, "Thermocapillary motion of deformable drops at finite Reynolds and Marangoni numbers", Phys. Fluids,
**9**, (4), pp. 845-855

- S H el-Maasarany, E Sharaf, F Moustafa, Ali Borhan, A Abdel-Fattah and A Hamza, 1989, "Anatomical basis of latissimus dorsi myocutaneous flap: clinical applications.", Surgical and radiologic anatomy : SRA,
**11**, (3), pp. 197-203

- M F Moustafa, Ali Borhan, Abdel-Fattah and Abdel-Fattah, 1978, "Burn contractures of the neck.", Plastic and reconstructive surgery,
**62**, (1), pp. 66-73

- E. Almatroushi and Ali Borhan, , "Interaction and coalescence of drops and bubbles in pressure-driven flow through a tube", Ind. Eng. Chem. Res.

- N. R. Gupta, H. Haj-Hariri and Ali Borhan, , "Effect of free surface heat transfer on thermocapillary flow in double-layer fluid structures", Heat & Mass Transfer,
**50**, pp. 333-339

- H. F. Wu, K. A. Fitchorn and Ali Borhan, , "An atomistic-continuum hybrid scheme for numerical simulation of droplet spreading on solid surfaces", Heat & Mass Transfer,
**50**, pp. 351-361

- S. Mahesri, H. Haj-Hariri and Ali Borhan, , "Effect of interface deformability on thermocapillary motion of a drop in a tube", Heat & Mass Trans.,
**50**, pp. 363-372

**Conference Proceedings**

- E. Almatroushi and Ali Borhan, 2011, "Interaction and coalescence of viscous drops translating through a capillary tube", Proceedings of Interdisciplinary Transport Phenomena VII: Fluid, Thermal, Biological, Materials and Space Sciences

- B. Keshavarzi, J. S. Ultman and Ali Borhan, 2009, "Numerical prediction of the focal sites of ozone-induced tissue injury in the respiratory tract", WIT Press, pp. 123-132

- S. Madasu and Ali Borhan, 2008, "Spreading of a surfactant-bearing drop on a rigid solid: a two-dimensional finite element model", Proceedings of the 16th Annual Conference of the CFD Society of Canada

- S. Madasu and Ali Borhan, 2007, "Spreading of a clean drop on a rigid solid: a two-dimensional finite element model", Proc. 15th Annual Conference of the CFD Society of Canada

- S. Madasu, Ali Borhan and J. S. Ultman, 2006, "Gas absorption is single airway bifurcations during expiration", Proc. 14th Annual Conference of the CFD Society of Canada

- J. V. Badding, P. J. A. Sazio, A. Amezcua Correa, T. J. Scheidemantel, C. E. Finlayson, N. F. Baril, D.-J. Won, H. Fang, B. Jackson, Ali Borhan and V. Gopalan, 2005, "Fabrication of extreme aspect ratio wires within photonic crystal fibers", Proc. SPIE 6005,
**60050I**

**Other**

- M Zaharia, Ali Borhan, D Gherca, A Pui, R Gradinaru, G Zbancioc and G Drochioiu, 2014, "Study on the mechanism of ferrite-induced dinitrophenol photodegradation.", European journal of mass spectrometry (Chichester, England),
**20**, (2), pp. 193-7

- H. Haj-Hariri and Ali Borhan, 1998, "Thermally-driven interfacial flow in multi-layered fluid structures", pp. 284-289

- M. Hemmat and Ali Borhan, 1997, "Deformation of viscous drops in flow through sinusoidally constricted capillaries", pp. 275-284